From f856309fc82a7ae28169c2a93193f39a89cbb53d Mon Sep 17 00:00:00 2001
From: Sebastian Eibl <sebastian.eibl@fau.de>
Date: Mon, 12 Aug 2019 14:58:05 +0200
Subject: [PATCH] updated all benchmarks
---
apps/benchmarks/GranularGas/GranularGas.cfg | 9 +-
.../GranularGas/MESA_PD_LoadBalancing.cpp | 523 ++++++++++--------
.../benchmarks/GranularGas/PE_GranularGas.cpp | 2 +-
apps/benchmarks/GranularGas/Parameters.cpp | 6 +
apps/benchmarks/GranularGas/Parameters.h | 5 +-
.../GranularGas/Parameters.templ.cpp | 2 +
.../benchmarks/GranularGas/Parameters.templ.h | 4 +-
apps/benchmarks/GranularGas/generateConfig.py | 2 +-
8 files changed, 325 insertions(+), 228 deletions(-)
diff --git a/apps/benchmarks/GranularGas/GranularGas.cfg b/apps/benchmarks/GranularGas/GranularGas.cfg
index 2c321312f..685b7dfc0 100644
--- a/apps/benchmarks/GranularGas/GranularGas.cfg
+++ b/apps/benchmarks/GranularGas/GranularGas.cfg
@@ -1,12 +1,13 @@
GranularGas
{
simulationCorner < 0, 0, 0 >;
- simulationDomain < 40, 40, 40 >;
+ simulationDomain < 80, 80, 80 >;
blocks < 2,2,2 >;
- isPeriodic < 1, 1, 1 >;
- initialRefinementLevel 0;
- sorting none;
+ isPeriodic < 0, 0, 0 >;
+ initialRefinementLevel 2;
+ sorting linear;
+ normal <1,1,1>;
radius 0.6;
spacing 1.0;
vMax 0.0;
diff --git a/apps/benchmarks/GranularGas/MESA_PD_LoadBalancing.cpp b/apps/benchmarks/GranularGas/MESA_PD_LoadBalancing.cpp
index 597eb3f7b..dd25a6bed 100644
--- a/apps/benchmarks/GranularGas/MESA_PD_LoadBalancing.cpp
+++ b/apps/benchmarks/GranularGas/MESA_PD_LoadBalancing.cpp
@@ -89,8 +89,9 @@ int main( int argc, char ** argv )
auto mpiManager = walberla::mpi::MPIManager::instance();
mpiManager->useWorldComm();
- logging::Logging::instance()->setStreamLogLevel(logging::Logging::INFO);
- logging::Logging::instance()->setFileLogLevel(logging::Logging::INFO);
+ // logging::Logging::instance()->setStreamLogLevel(logging::Logging::INFO);
+ // logging::Logging::instance()->includeLoggingToFile("LoadBalancing");
+ // logging::Logging::instance()->setFileLogLevel(logging::Logging::DETAIL);
WALBERLA_LOG_INFO_ON_ROOT( "config file: " << argv[1] );
WALBERLA_LOG_INFO_ON_ROOT( "waLBerla Revision: " << WALBERLA_GIT_SHA1 );
@@ -184,7 +185,6 @@ int main( int argc, char ** argv )
}
auto domain = std::make_shared<domain::BlockForestDomain>(forest);
- auto simulationDomain = forest->getDomain();
WALBERLA_LOG_INFO_ON_ROOT("*** SETUP - START ***");
@@ -205,7 +205,7 @@ int main( int argc, char ** argv )
params.spacing))
{
WALBERLA_CHECK(iBlk.getAABB().contains(pt));
- auto tmp = dot( (pt - center), Vec3(real_t(1), real_t(1), real_t(1)) );
+ auto tmp = dot( (pt - center), params.normal );
if (tmp < 0)
{
createSphere(*ps, pt, params.radius, smallSphere);
@@ -216,27 +216,6 @@ int main( int argc, char ** argv )
walberla::mpi::reduceInplace(numParticles, walberla::mpi::SUM);
WALBERLA_LOG_INFO_ON_ROOT("#particles created: " << numParticles);
- auto shift = (params.spacing - params.radius - params.radius) * real_t(0.5);
- auto confiningDomain = simulationDomain.getExtended(shift);
-
- // if (!forest->isPeriodic(0))
- // {
- // createPlane(*ps, *ss, confiningDomain.minCorner(), Vec3(+1,0,0));
- // createPlane(*ps, *ss, confiningDomain.maxCorner(), Vec3(-1,0,0));
- // }
-
- // if (!forest->isPeriodic(1))
- // {
- // createPlane(*ps, *ss, confiningDomain.minCorner(), Vec3(0,+1,0));
- // createPlane(*ps, *ss, confiningDomain.maxCorner(), Vec3(0,-1,0));
- // }
-
- // if (!forest->isPeriodic(2))
- // {
- // createPlane(*ps, *ss, confiningDomain.minCorner(), Vec3(0,0,+1));
- // createPlane(*ps, *ss, confiningDomain.maxCorner(), Vec3(0,0,-1));
- // }
-
WALBERLA_LOG_INFO_ON_ROOT("*** SETUP - END ***");
WALBERLA_LOG_INFO_ON_ROOT("*** VTK ***");
@@ -264,224 +243,328 @@ int main( int argc, char ** argv )
mpi::SyncNextNeighborsBlockForest SNN;
// initial sync
- domain::createWithNeighborhood( accessor, *forest, *ic );
- forest->refresh();
- domain->refresh();
- lc = std::make_shared<data::LinkedCells>(domain->getUnionOfLocalAABBs().getExtended(params.spacing), params.spacing );
ps->forEachParticle(true, kernel::SelectLocal(), accessor, assoc, accessor);
- WALBERLA_LOG_DEVEL_VAR(ps->size());
SNN(*ps, forest, domain);
sortParticleStorage(*ps, params.sorting, lc->domain_, uint_c(lc->numCellsPerDim_[0]));
- for (int64_t outerIteration = 0; outerIteration < params.numOuterIterations; ++outerIteration)
+ WcTimer timerImbalanced;
+ WcTimer timerLoadBalancing;
+ WcTimer timerBalanced;
+ WcTimingPool tpImbalanced;
+ WcTimingPool tpBalanced;
+ auto SNNBytesSent = SNN.getBytesSent();
+ auto SNNBytesReceived = SNN.getBytesReceived();
+ auto SNNSends = SNN.getNumberOfSends();
+ auto SNNReceives = SNN.getNumberOfReceives();
+ auto RPBytesSent = RP.getBytesSent();
+ auto RPBytesReceived = RP.getBytesReceived();
+ auto RPSends = RP.getNumberOfSends();
+ auto RPReceives = RP.getNumberOfReceives();
+ int64_t contactsChecked = 0;
+ int64_t contactsDetected = 0;
+ int64_t contactsTreated = 0;
+
+ WALBERLA_LOG_DEVEL_ON_ROOT("running imbalanced simulation");
+ timerImbalanced.start();
+ for (int64_t i=0; i < params.simulationSteps; ++i)
{
- WALBERLA_LOG_DEVEL_ON_ROOT("*** RUNNING OUTER ITERATION " << outerIteration << " ***");
-
- WcTimer timer;
- WcTimingPool tp;
- auto SNNBytesSent = SNN.getBytesSent();
- auto SNNBytesReceived = SNN.getBytesReceived();
- auto SNNSends = SNN.getNumberOfSends();
- auto SNNReceives = SNN.getNumberOfReceives();
- auto RPBytesSent = RP.getBytesSent();
- auto RPBytesReceived = RP.getBytesReceived();
- auto RPSends = RP.getNumberOfSends();
- auto RPReceives = RP.getNumberOfReceives();
- int64_t contactsChecked = 0;
- int64_t contactsDetected = 0;
- int64_t contactsTreated = 0;
+ //WALBERLA_LOG_DEVEL_ON_ROOT("timestep: " << i << " / " << params.simulationSteps );
+ // if (i % params.visSpacing == 0)
+ // {
+ // vtkWriter->write();
+ // }
+
+ tpImbalanced["AssocToBlock"].start();
+ ps->forEachParticle(true, kernel::SelectLocal(), accessor, assoc, accessor);
if (params.bBarrier) WALBERLA_MPI_BARRIER();
- std::stringstream fout;
- timer.start();
- for (int64_t i=0; i < params.simulationSteps; ++i)
+ tpImbalanced["AssocToBlock"].end();
+
+ tpImbalanced["GenerateLinkedCells"].start();
+ lc->clear();
+ ps->forEachParticle(true, kernel::SelectAll(), accessor, ipilc, accessor, *lc);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpImbalanced["GenerateLinkedCells"].end();
+
+ tpImbalanced["DEM"].start();
+ contactsChecked = 0;
+ contactsDetected = 0;
+ contactsTreated = 0;
+ lc->forEachParticlePairHalf(true,
+ kernel::SelectAll(),
+ accessor,
+ [&](const size_t idx1, const size_t idx2, auto& ac)
{
- fout.clear();
- //WALBERLA_LOG_DEVEL_ON_ROOT("timestep: " << i << " / " << params.simulationSteps );
- // if (i % params.visSpacing == 0)
- // {
- // vtkWriter->write();
- // }
-
- tp["AssocToBlock"].start();
- ps->forEachParticle(true, kernel::SelectLocal(), accessor, assoc, accessor);
- if (params.bBarrier) WALBERLA_MPI_BARRIER();
- tp["AssocToBlock"].end();
-
- tp["GenerateLinkedCells"].start();
- lc->clear();
- ps->forEachParticle(true, kernel::SelectAll(), accessor, ipilc, accessor, *lc);
- if (params.bBarrier) WALBERLA_MPI_BARRIER();
- tp["GenerateLinkedCells"].end();
-
- tp["DEM"].start();
- contactsChecked = 0;
- contactsDetected = 0;
- contactsTreated = 0;
- lc->forEachParticlePairHalf(true,
- kernel::SelectAll(),
- accessor,
- [&](const size_t idx1, const size_t idx2, auto& ac)
+ ++contactsChecked;
+ if (double_cast(idx1, idx2, ac, acd, ac ))
{
- ++contactsChecked;
- if (double_cast(idx1, idx2, ac, acd, ac ))
+ ++contactsDetected;
+ if (contact_filter(acd.getIdx1(), acd.getIdx2(), ac, acd.getContactPoint(), *domain))
{
- ++contactsDetected;
- if (contact_filter(acd.getIdx1(), acd.getIdx2(), ac, acd.getContactPoint(), *domain))
- {
- ++contactsTreated;
- dem(acd.getIdx1(), acd.getIdx2(), ac, acd.getContactPoint(), acd.getContactNormal(), acd.getPenetrationDepth());
- }
+ ++contactsTreated;
+ dem(acd.getIdx1(), acd.getIdx2(), ac, acd.getContactPoint(), acd.getContactNormal(), acd.getPenetrationDepth());
}
- },
- accessor );
- if (params.bBarrier) WALBERLA_MPI_BARRIER();
- tp["DEM"].end();
-
- tp["ReduceForce"].start();
- RP.operator()<ForceTorqueNotification>(*ps);
- if (params.bBarrier) WALBERLA_MPI_BARRIER();
- tp["ReduceForce"].end();
-
- tp["Euler"].start();
- //ps->forEachParticle(false, [&](const size_t idx){WALBERLA_CHECK_EQUAL(ps->getForce(idx), Vec3(0,0,0), *(*ps)[idx] << "\n" << idx);});
- ps->forEachParticle(true, kernel::SelectLocal(), accessor, explicitEulerWithShape, accessor);
- if (params.bBarrier) WALBERLA_MPI_BARRIER();
- tp["Euler"].end();
-
- tp["SNN"].start();
- SNN(*ps, forest, domain);
- if (params.bBarrier) WALBERLA_MPI_BARRIER();
- tp["SNN"].end();
- }
- timer.end();
-
- SNNBytesSent = SNN.getBytesSent();
- SNNBytesReceived = SNN.getBytesReceived();
- SNNSends = SNN.getNumberOfSends();
- SNNReceives = SNN.getNumberOfReceives();
- RPBytesSent = RP.getBytesSent();
- RPBytesReceived = RP.getBytesReceived();
- RPSends = RP.getNumberOfSends();
- RPReceives = RP.getNumberOfReceives();
- walberla::mpi::reduceInplace(SNNBytesSent, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(SNNBytesReceived, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(SNNSends, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(SNNReceives, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(RPBytesSent, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(RPBytesReceived, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(RPSends, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(RPReceives, walberla::mpi::SUM);
- auto cC = walberla::mpi::reduce(contactsChecked, walberla::mpi::SUM);
- auto cD = walberla::mpi::reduce(contactsDetected, walberla::mpi::SUM);
- auto cT = walberla::mpi::reduce(contactsTreated, walberla::mpi::SUM);
- WALBERLA_LOG_DEVEL_ON_ROOT( "SNN bytes communicated: " << SNNBytesSent << " / " << SNNBytesReceived );
- WALBERLA_LOG_DEVEL_ON_ROOT( "SNN communication partners: " << SNNSends << " / " << SNNReceives );
- WALBERLA_LOG_DEVEL_ON_ROOT( "RP bytes communicated: " << RPBytesSent << " / " << RPBytesReceived );
- WALBERLA_LOG_DEVEL_ON_ROOT( "RP communication partners: " << RPSends << " / " << RPReceives );
- WALBERLA_LOG_DEVEL_ON_ROOT( "contacts checked/detected/treated: " << cC << " / " << cD << " / " << cT );
-
- auto timer_reduced = walberla::timing::getReduced(timer, REDUCE_TOTAL, 0);
- double PUpS = 0.0;
- WALBERLA_ROOT_SECTION()
- {
- WALBERLA_LOG_INFO_ON_ROOT(*timer_reduced);
- WALBERLA_LOG_INFO_ON_ROOT("runtime: " << timer_reduced->max());
- PUpS = double_c(numParticles) * double_c(params.simulationSteps) / double_c(timer_reduced->max());
- WALBERLA_LOG_INFO_ON_ROOT("PUpS: " << PUpS);
- }
+ }
+ },
+ accessor );
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpImbalanced["DEM"].end();
- auto tp_reduced = tp.getReduced();
- WALBERLA_LOG_INFO_ON_ROOT(*tp_reduced);
- WALBERLA_LOG_INFO_ON_ROOT("*** SIMULATION - END ***");
+ tpImbalanced["ReduceForce"].start();
+ RP.operator()<ForceTorqueNotification>(*ps);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpImbalanced["ReduceForce"].end();
- if (params.checkSimulation)
- {
- check(*ps, *forest, params.spacing);
- }
+ tpImbalanced["Euler"].start();
+ //ps->forEachParticle(false, [&](const size_t idx){WALBERLA_CHECK_EQUAL(ps->getForce(idx), Vec3(0,0,0), *(*ps)[idx] << "\n" << idx);});
+ ps->forEachParticle(true, kernel::SelectLocal(), accessor, explicitEulerWithShape, accessor);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpImbalanced["Euler"].end();
+
+ tpImbalanced["SNN"].start();
+ SNN(*ps, forest, domain);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpImbalanced["SNN"].end();
+ }
+ timerImbalanced.end();
+ WALBERLA_MPI_BARRIER();
- WALBERLA_LOG_INFO_ON_ROOT("*** SQL OUTPUT - START ***");
- numParticles = 0;
- int64_t numGhostParticles = 0;
- ps->forEachParticle(false,
- kernel::SelectAll(),
- accessor,
- [&numParticles, &numGhostParticles](const size_t idx, auto& ac)
+ timerLoadBalancing.start();
+ if (bRebalance)
+ {
+ WALBERLA_LOG_DEVEL_ON_ROOT("running load balancing");
+ domain::createWithNeighborhood( accessor, *forest, *ic );
+ for (auto pIt = ps->begin(); pIt != ps->end(); )
{
- if (data::particle_flags::isSet( ac.getFlagsRef(idx), data::particle_flags::GHOST))
+ using namespace walberla::mesa_pd::data::particle_flags;
+ if (isSet(pIt->getFlags(), GHOST))
{
- ++numGhostParticles;
+ pIt = ps->erase(pIt);
} else
{
- ++numParticles;
+ pIt->getGhostOwnersRef().clear();
+ ++pIt;
}
- },
- accessor);
- walberla::mpi::reduceInplace(numParticles, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(numGhostParticles, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(contactsChecked, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(contactsDetected, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(contactsTreated, walberla::mpi::SUM);
- double linkedCellsVolume = lc->domain_.volume();
- walberla::mpi::reduceInplace(linkedCellsVolume, walberla::mpi::SUM);
- size_t numLinkedCells = lc->cells_.size();
- walberla::mpi::reduceInplace(numLinkedCells, walberla::mpi::SUM);
- size_t local_aabbs = domain->getNumLocalAABBs();
- size_t neighbor_subdomains = domain->getNumNeighborSubdomains();
- size_t neighbor_processes = domain->getNumNeighborProcesses();
- walberla::mpi::reduceInplace(local_aabbs, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(neighbor_subdomains, walberla::mpi::SUM);
- walberla::mpi::reduceInplace(neighbor_processes, walberla::mpi::SUM);
-
- WALBERLA_LOG_DEVEL_VAR_ON_ROOT(numParticles);
- WALBERLA_LOG_DEVEL_VAR_ON_ROOT(numGhostParticles);
-
- uint_t runId = uint_c(-1);
- WALBERLA_ROOT_SECTION()
- {
- stringProperties["walberla_git"] = WALBERLA_GIT_SHA1;
- stringProperties["tag"] = "mesa_pd";
- integerProperties["mpi_num_processes"] = mpiManager->numProcesses();
- integerProperties["omp_max_threads"] = omp_get_max_threads();
- realProperties["PUpS"] = double_c(PUpS);
- realProperties["timer_min"] = timer_reduced->min();
- realProperties["timer_max"] = timer_reduced->max();
- realProperties["timer_average"] = timer_reduced->average();
- realProperties["timer_total"] = timer_reduced->total();
- integerProperties["outerIteration"] = int64_c(outerIteration);
- integerProperties["num_particles"] = numParticles;
- integerProperties["num_ghost_particles"] = numGhostParticles;
- integerProperties["contacts_checked"] = contactsChecked;
- integerProperties["contacts_detected"] = contactsDetected;
- integerProperties["contacts_treated"] = contactsTreated;
- integerProperties["local_aabbs"] = int64_c(local_aabbs);
- integerProperties["neighbor_subdomains"] = int64_c(neighbor_subdomains);
- integerProperties["neighbor_processes"] = int64_c(neighbor_processes);
- integerProperties["SNNBytesSent"] = SNNBytesSent;
- integerProperties["SNNBytesReceived"] = SNNBytesReceived;
- integerProperties["SNNSends"] = SNNSends;
- integerProperties["SNNReceives"] = SNNReceives;
- integerProperties["RPBytesSent"] = RPBytesSent;
- integerProperties["RPBytesReceived"] = RPBytesReceived;
- integerProperties["RPSends"] = RPSends;
- integerProperties["RPReceives"] = RPReceives;
- realProperties["linkedCellsVolume"] = linkedCellsVolume;
- integerProperties["numLinkedCells"] = int64_c(numLinkedCells);
-
- addBuildInfoToSQL( integerProperties, realProperties, stringProperties );
- saveToSQL(params, integerProperties, realProperties, stringProperties );
- addDomainPropertiesToSQL(*forest, integerProperties, realProperties, stringProperties);
- addSlurmPropertiesToSQL(integerProperties, realProperties, stringProperties);
-
- runId = postprocessing::storeRunInSqliteDB( params.sqlFile, integerProperties, stringProperties, realProperties );
- postprocessing::storeTimingPoolInSqliteDB( params.sqlFile, runId, *tp_reduced, "Timeloop" );
}
+ forest->refresh();
+ domain->refresh();
+ lc = std::make_shared<data::LinkedCells>(domain->getUnionOfLocalAABBs().getExtended(params.spacing), params.spacing );
+ ps->forEachParticle(true, kernel::SelectLocal(), accessor, assoc, accessor);
+ WALBERLA_LOG_DEVEL_VAR(ps->size());
+ SNN(*ps, forest, domain);
+ sortParticleStorage(*ps, params.sorting, lc->domain_, uint_c(lc->numCellsPerDim_[0]));
+ }
+ timerLoadBalancing.end();
+
+ WALBERLA_MPI_BARRIER();
+ WALBERLA_LOG_DEVEL_ON_ROOT("running balanced simulation");
+ timerBalanced.start();
+ for (int64_t i=0; i < params.simulationSteps; ++i)
+ {
+ //WALBERLA_LOG_DEVEL_ON_ROOT("timestep: " << i << " / " << params.simulationSteps );
+ // if (i % params.visSpacing == 0)
+ // {
+ // vtkWriter->write();
+ // }
+
+ tpBalanced["AssocToBlock"].start();
+ ps->forEachParticle(true, kernel::SelectLocal(), accessor, assoc, accessor);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpBalanced["AssocToBlock"].end();
+
+ tpBalanced["GenerateLinkedCells"].start();
+ lc->clear();
+ ps->forEachParticle(true, kernel::SelectAll(), accessor, ipilc, accessor, *lc);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpBalanced["GenerateLinkedCells"].end();
+
+ tpBalanced["DEM"].start();
+ contactsChecked = 0;
+ contactsDetected = 0;
+ contactsTreated = 0;
+ lc->forEachParticlePairHalf(true,
+ kernel::SelectAll(),
+ accessor,
+ [&](const size_t idx1, const size_t idx2, auto& ac)
+ {
+ ++contactsChecked;
+ if (double_cast(idx1, idx2, ac, acd, ac ))
+ {
+ ++contactsDetected;
+ if (contact_filter(acd.getIdx1(), acd.getIdx2(), ac, acd.getContactPoint(), *domain))
+ {
+ ++contactsTreated;
+ dem(acd.getIdx1(), acd.getIdx2(), ac, acd.getContactPoint(), acd.getContactNormal(), acd.getPenetrationDepth());
+ }
+ }
+ },
+ accessor );
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpBalanced["DEM"].end();
+
+ tpBalanced["ReduceForce"].start();
+ RP.operator()<ForceTorqueNotification>(*ps);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpBalanced["ReduceForce"].end();
+
+ tpBalanced["Euler"].start();
+ //ps->forEachParticle(false, [&](const size_t idx){WALBERLA_CHECK_EQUAL(ps->getForce(idx), Vec3(0,0,0), *(*ps)[idx] << "\n" << idx);});
+ ps->forEachParticle(true, kernel::SelectLocal(), accessor, explicitEulerWithShape, accessor);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpBalanced["Euler"].end();
+
+ tpBalanced["SNN"].start();
+ SNN(*ps, forest, domain);
+ if (params.bBarrier) WALBERLA_MPI_BARRIER();
+ tpBalanced["SNN"].end();
+ }
+ timerBalanced.end();
+
+ SNNBytesSent = SNN.getBytesSent();
+ SNNBytesReceived = SNN.getBytesReceived();
+ SNNSends = SNN.getNumberOfSends();
+ SNNReceives = SNN.getNumberOfReceives();
+ RPBytesSent = RP.getBytesSent();
+ RPBytesReceived = RP.getBytesReceived();
+ RPSends = RP.getNumberOfSends();
+ RPReceives = RP.getNumberOfReceives();
+ walberla::mpi::reduceInplace(SNNBytesSent, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(SNNBytesReceived, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(SNNSends, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(SNNReceives, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(RPBytesSent, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(RPBytesReceived, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(RPSends, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(RPReceives, walberla::mpi::SUM);
+ auto cC = walberla::mpi::reduce(contactsChecked, walberla::mpi::SUM);
+ auto cD = walberla::mpi::reduce(contactsDetected, walberla::mpi::SUM);
+ auto cT = walberla::mpi::reduce(contactsTreated, walberla::mpi::SUM);
+ WALBERLA_LOG_DEVEL_ON_ROOT( "SNN bytes communicated: " << SNNBytesSent << " / " << SNNBytesReceived );
+ WALBERLA_LOG_DEVEL_ON_ROOT( "SNN communication partners: " << SNNSends << " / " << SNNReceives );
+ WALBERLA_LOG_DEVEL_ON_ROOT( "RP bytes communicated: " << RPBytesSent << " / " << RPBytesReceived );
+ WALBERLA_LOG_DEVEL_ON_ROOT( "RP communication partners: " << RPSends << " / " << RPReceives );
+ WALBERLA_LOG_DEVEL_ON_ROOT( "contacts checked/detected/treated: " << cC << " / " << cD << " / " << cT );
+
+ auto timerImbalancedReduced = walberla::timing::getReduced(timerImbalanced, REDUCE_TOTAL, 0);
+ double PUpSImbalanced = 0.0;
+ WALBERLA_ROOT_SECTION()
+ {
+ WALBERLA_LOG_INFO_ON_ROOT(*timerImbalancedReduced);
+ PUpSImbalanced = double_c(numParticles) * double_c(params.simulationSteps) / double_c(timerImbalancedReduced->max());
+ WALBERLA_LOG_INFO_ON_ROOT("PUpS: " << PUpSImbalanced);
+ }
+
+ auto timerBalancedReduced = walberla::timing::getReduced(timerBalanced, REDUCE_TOTAL, 0);
+ double PUpSBalanced = 0.0;
+ WALBERLA_ROOT_SECTION()
+ {
+ WALBERLA_LOG_INFO_ON_ROOT(*timerBalancedReduced);
+ PUpSBalanced = double_c(numParticles) * double_c(params.simulationSteps) / double_c(timerBalancedReduced->max());
+ WALBERLA_LOG_INFO_ON_ROOT("PUpS: " << PUpSBalanced);
+ }
+
+ auto timerLoadBalancingReduced = walberla::timing::getReduced(timerLoadBalancing, REDUCE_TOTAL, 0);
+
+ auto tpImbalancedReduced = tpImbalanced.getReduced();
+ WALBERLA_LOG_INFO_ON_ROOT(*tpImbalancedReduced);
+
+ auto tpBalancedReduced = tpBalanced.getReduced();
+ WALBERLA_LOG_INFO_ON_ROOT(*tpBalancedReduced);
+ WALBERLA_LOG_INFO_ON_ROOT("*** SIMULATION - END ***");
+
+ if (params.checkSimulation)
+ {
+ check(*ps, *forest, params.spacing);
+ }
- if (params.storeNodeTimings)
+ WALBERLA_LOG_INFO_ON_ROOT("*** SQL OUTPUT - START ***");
+ numParticles = 0;
+ int64_t numGhostParticles = 0;
+ ps->forEachParticle(false,
+ kernel::SelectAll(),
+ accessor,
+ [&numParticles, &numGhostParticles](const size_t idx, auto& ac)
+ {
+ if (data::particle_flags::isSet( ac.getFlagsRef(idx), data::particle_flags::GHOST))
+ {
+ ++numGhostParticles;
+ } else
{
- storeNodeTimings(runId, params.sqlFile, "NodeTiming", tp);
+ ++numParticles;
}
- WALBERLA_LOG_INFO_ON_ROOT("*** SQL OUTPUT - END ***");
+ },
+ accessor);
+ walberla::mpi::reduceInplace(numParticles, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(numGhostParticles, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(contactsChecked, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(contactsDetected, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(contactsTreated, walberla::mpi::SUM);
+ double linkedCellsVolume = lc->domain_.volume();
+ walberla::mpi::reduceInplace(linkedCellsVolume, walberla::mpi::SUM);
+ size_t numLinkedCells = lc->cells_.size();
+ walberla::mpi::reduceInplace(numLinkedCells, walberla::mpi::SUM);
+ size_t local_aabbs = domain->getNumLocalAABBs();
+ size_t neighbor_subdomains = domain->getNumNeighborSubdomains();
+ size_t neighbor_processes = domain->getNumNeighborProcesses();
+ walberla::mpi::reduceInplace(local_aabbs, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(neighbor_subdomains, walberla::mpi::SUM);
+ walberla::mpi::reduceInplace(neighbor_processes, walberla::mpi::SUM);
+
+ uint_t runId = uint_c(-1);
+ WALBERLA_ROOT_SECTION()
+ {
+ stringProperties["walberla_git"] = WALBERLA_GIT_SHA1;
+ stringProperties["tag"] = "mesa_pd";
+ integerProperties["mpi_num_processes"] = mpiManager->numProcesses();
+ integerProperties["omp_max_threads"] = omp_get_max_threads();
+ realProperties["imbalanced_PUpS"] = double_c(PUpSImbalanced);
+ realProperties["imbalanced_timer_min"] = timerImbalancedReduced->min();
+ realProperties["imbalanced_timer_max"] = timerImbalancedReduced->max();
+ realProperties["imbalanced_timer_average"] = timerImbalancedReduced->average();
+ realProperties["imbalanced_timer_total"] = timerImbalancedReduced->total();
+ realProperties["loadbalancing_timer_min"] = timerLoadBalancingReduced->min();
+ realProperties["loadbalancing_timer_max"] = timerLoadBalancingReduced->max();
+ realProperties["loadbalancing_timer_average"] = timerLoadBalancingReduced->average();
+ realProperties["loadbalancing_timer_total"] = timerLoadBalancingReduced->total();
+ realProperties["balanced_PUpS"] = double_c(PUpSBalanced);
+ realProperties["balanced_timer_min"] = timerBalancedReduced->min();
+ realProperties["balanced_timer_max"] = timerBalancedReduced->max();
+ realProperties["balanced_timer_average"] = timerBalancedReduced->average();
+ realProperties["balanced_timer_total"] = timerBalancedReduced->total();
+ integerProperties["num_particles"] = numParticles;
+ integerProperties["num_ghost_particles"] = numGhostParticles;
+ integerProperties["contacts_checked"] = contactsChecked;
+ integerProperties["contacts_detected"] = contactsDetected;
+ integerProperties["contacts_treated"] = contactsTreated;
+ integerProperties["local_aabbs"] = int64_c(local_aabbs);
+ integerProperties["neighbor_subdomains"] = int64_c(neighbor_subdomains);
+ integerProperties["neighbor_processes"] = int64_c(neighbor_processes);
+ integerProperties["SNNBytesSent"] = SNNBytesSent;
+ integerProperties["SNNBytesReceived"] = SNNBytesReceived;
+ integerProperties["SNNSends"] = SNNSends;
+ integerProperties["SNNReceives"] = SNNReceives;
+ integerProperties["RPBytesSent"] = RPBytesSent;
+ integerProperties["RPBytesReceived"] = RPBytesReceived;
+ integerProperties["RPSends"] = RPSends;
+ integerProperties["RPReceives"] = RPReceives;
+ realProperties["linkedCellsVolume"] = linkedCellsVolume;
+ integerProperties["numLinkedCells"] = int64_c(numLinkedCells);
+
+ addBuildInfoToSQL( integerProperties, realProperties, stringProperties );
+ saveToSQL(params, integerProperties, realProperties, stringProperties );
+ addDomainPropertiesToSQL(*forest, integerProperties, realProperties, stringProperties);
+ addSlurmPropertiesToSQL(integerProperties, realProperties, stringProperties);
+
+ runId = postprocessing::storeRunInSqliteDB( params.sqlFile, integerProperties, stringProperties, realProperties );
+ postprocessing::storeTimingPoolInSqliteDB( params.sqlFile, runId, *tpImbalancedReduced, "imbalanced" );
+ postprocessing::storeTimingPoolInSqliteDB( params.sqlFile, runId, *tpImbalancedReduced, "balanced" );
+ }
+
+ if (params.storeNodeTimings)
+ {
+ storeNodeTimings(runId, params.sqlFile, "NodeTimingImbalanced", tpImbalanced);
+ storeNodeTimings(runId, params.sqlFile, "NodeTimingBalanced", tpBalanced);
}
+ WALBERLA_LOG_INFO_ON_ROOT("*** SQL OUTPUT - END ***");
return EXIT_SUCCESS;
}
diff --git a/apps/benchmarks/GranularGas/PE_GranularGas.cpp b/apps/benchmarks/GranularGas/PE_GranularGas.cpp
index e235f348f..96ded8e71 100644
--- a/apps/benchmarks/GranularGas/PE_GranularGas.cpp
+++ b/apps/benchmarks/GranularGas/PE_GranularGas.cpp
@@ -90,7 +90,7 @@ int main( int argc, char ** argv )
auto cfg = env.config();
if (cfg == nullptr) WALBERLA_ABORT("No config specified!");
const Config::BlockHandle mainConf = cfg->getBlock( "GranularGas" );
- Parameters params;
+ mesa_pd::Parameters params;
loadFromConfig(params, mainConf);
WALBERLA_LOG_INFO_ON_ROOT("*** GLOBALBODYSTORAGE ***");
diff --git a/apps/benchmarks/GranularGas/Parameters.cpp b/apps/benchmarks/GranularGas/Parameters.cpp
index 2215898ba..228f9e33e 100644
--- a/apps/benchmarks/GranularGas/Parameters.cpp
+++ b/apps/benchmarks/GranularGas/Parameters.cpp
@@ -29,12 +29,16 @@
#include <core/logging/Logging.h>
namespace walberla {
+namespace mesa_pd {
void loadFromConfig(Parameters& params, const Config::BlockHandle& cfg)
{
params.sorting = cfg.getParameter<std::string>("sorting", "none" );
WALBERLA_LOG_INFO_ON_ROOT("sorting: " << params.sorting);
+ params.normal = cfg.getParameter<Vec3>("normal", Vec3(real_t(1.0), real_t(1.0), real_t(1.0)) );
+ WALBERLA_LOG_INFO_ON_ROOT("normal: " << params.normal);
+
params.spacing = cfg.getParameter<real_t>("spacing", real_t(1.0) );
WALBERLA_LOG_INFO_ON_ROOT("spacing: " << params.spacing);
@@ -107,6 +111,7 @@ void saveToSQL(const Parameters& params,
{
stringProperties["sorting"] = params.sorting;
+
realProperties["spacing"] = double_c(params.spacing);
realProperties["radius"] = double_c(params.radius);
@@ -145,4 +150,5 @@ void saveToSQL(const Parameters& params,
}
+} //namespace mesa_pd
} //namespace walberla
\ No newline at end of file
diff --git a/apps/benchmarks/GranularGas/Parameters.h b/apps/benchmarks/GranularGas/Parameters.h
index 31ce0cb12..c765ab202 100644
--- a/apps/benchmarks/GranularGas/Parameters.h
+++ b/apps/benchmarks/GranularGas/Parameters.h
@@ -27,15 +27,17 @@
#pragma once
#include <core/config/Config.h>
-#include <core/DataTypes.h>
+#include <mesa_pd/data/DataTypes.h>
#include <string>
namespace walberla {
+namespace mesa_pd {
struct Parameters
{
std::string sorting = "none";
+ Vec3 normal = Vec3(real_t(1.0), real_t(1.0), real_t(1.0));
real_t spacing = real_t(1.0);
real_t radius = real_t(0.5);
bool bBarrier = false;
@@ -67,4 +69,5 @@ void saveToSQL(const Parameters& params,
std::map< std::string, double >& realProperties,
std::map< std::string, std::string >& stringProperties );
+} //namespace mesa_pd
} //namespace walberla
\ No newline at end of file
diff --git a/apps/benchmarks/GranularGas/Parameters.templ.cpp b/apps/benchmarks/GranularGas/Parameters.templ.cpp
index 8f9be9811..c8aae96b3 100644
--- a/apps/benchmarks/GranularGas/Parameters.templ.cpp
+++ b/apps/benchmarks/GranularGas/Parameters.templ.cpp
@@ -29,6 +29,7 @@
#include <core/logging/Logging.h>
namespace walberla {
+namespace mesa_pd {
void loadFromConfig(Parameters& params, const Config::BlockHandle& cfg)
{
@@ -56,4 +57,5 @@ void saveToSQL(const Parameters& params,
{% endfor %}
}
+} //namespace mesa_pd
} //namespace walberla
diff --git a/apps/benchmarks/GranularGas/Parameters.templ.h b/apps/benchmarks/GranularGas/Parameters.templ.h
index 29b18935c..6f0200412 100644
--- a/apps/benchmarks/GranularGas/Parameters.templ.h
+++ b/apps/benchmarks/GranularGas/Parameters.templ.h
@@ -27,11 +27,12 @@
#pragma once
#include <core/config/Config.h>
-#include <core/DataTypes.h>
+#include <mesa_pd/data/DataTypes.h>
#include <string>
namespace walberla {
+namespace mesa_pd {
struct Parameters
{
@@ -48,4 +49,5 @@ void saveToSQL(const Parameters& params,
std::map< std::string, double >& realProperties,
std::map< std::string, std::string >& stringProperties );
+} //namespace mesa_pd
} //namespace walberla
diff --git a/apps/benchmarks/GranularGas/generateConfig.py b/apps/benchmarks/GranularGas/generateConfig.py
index 04fdf2122..c5e777106 100755
--- a/apps/benchmarks/GranularGas/generateConfig.py
+++ b/apps/benchmarks/GranularGas/generateConfig.py
@@ -5,6 +5,7 @@ from ConfigGenerator import Config
cfg = Config()
cfg.addParameter("sorting", "std::string", '"none"')
+cfg.addParameter("normal", "Vec3", "Vec3(real_t(1.0), real_t(1.0), real_t(1.0))")
cfg.addParameter("spacing", "real_t", "real_t(1.0)")
cfg.addParameter("radius", "real_t", "real_t(0.5)")
cfg.addParameter("bBarrier", "bool", "false")
@@ -28,5 +29,4 @@ cfg.addParameter("metisAlgorithm", "std::string", '"PART_GEOM_KWAY"' );
cfg.addParameter("metisWeightsToUse", "std::string", '"BOTH_WEIGHTS"' );
cfg.addParameter("metisEdgeSource", "std::string", '"EDGES_FROM_EDGE_WEIGHTS"' );
-
cfg.generate()
--
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