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Commit 44e3cb09 authored by Jean-Noël Grad's avatar Jean-Noël Grad
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Cleanup BibTeX file 

Replace preprints by published papers. Fix author lists, page
numbers, capitalization in titles and journals. Add missing DOIs.
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...@@ -69,14 +69,14 @@ Additionally, there is a folder for full-fledged application codes to be found u ...@@ -69,14 +69,14 @@ Additionally, there is a folder for full-fledged application codes to be found u
\section cite Please cite us \section cite Please cite us
If you use waLBerla in the preparation of a publication, please cite If you use waLBerla in the preparation of a publication, please cite
\cite godenschwager2013framework and \cite bauer2020walberla. There are separate publications for some modules, \cite godenschwager2013framework and \cite bauer2021walberla. There are separate publications for some modules,
which you should cite in addition if you use them. which you should cite in addition if you use them.
- Grid refinement: \cite schornbaum2016massively - Grid refinement: \cite schornbaum2016massively
- PE coupling: \cite rettinger2017comparative - PE coupling: \cite rettinger2017comparative
- Python interface: \cite bauer2015python - Python interface: \cite bauer2016python
- pystencils code generation: \cite bauer2019code - pystencils code generation: \cite bauer2019code
- lbmpy LB model generation: \cite bauer2020lbmpy - lbmpy LB model generation: \cite bauer2021lbmpy
\htmlonly \htmlonly
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doc/walberla.bib
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% Encoding: US-ASCII % Encoding: US-ASCII
@Article{bauer2015python, @Article{bauer2016python,
author = {Bauer, Martin and Schornbaum, Florian and Godenschwager, Christian and Markl, Matthias and Anderl, Daniela and K{\"o}stler, Harald and R{\"u}de, Ulrich}, author = {Bauer, Martin and Schornbaum, Florian and Godenschwager, Christian and Markl, Matthias and Anderl, Daniela and K{\"o}stler, Harald and R{\"u}de, Ulrich},
title = {A Python extension for the massively parallel multiphysics simulation framework waLBerla}, title = {A {Python} extension for the massively parallel multiphysics simulation framework {waLBerla}},
journal = {International Journal of Parallel, Emergent and Distributed Systems}, journal = {International Journal of Parallel, Emergent and Distributed Systems},
year = {2015}, year = {2016},
publisher = {Taylor and Francis}, publisher = {Taylor and Francis},
volume = {31},
number = {6},
pages = {529--542},
doi = {10.1080/17445760.2015.1118478},
} }
@InProceedings{godenschwager2013framework, @InProceedings{godenschwager2013framework,
...@@ -15,11 +19,14 @@ ...@@ -15,11 +19,14 @@
year = {2013}, year = {2013},
pages = {35}, pages = {35},
organization = {ACM}, organization = {ACM},
publisher = {Association for Computing Machinery},
doi = {10.1145/2503210.2503273},
isbn = {9781450323789},
} }
@Article{schornbaum2016massively, @Article{schornbaum2016massively,
author = {Florian Schornbaum and Ulrich R{\"u}de}, author = {Florian Schornbaum and Ulrich R{\"u}de},
title = {Massively Parallel Algorithms for the Lattice Boltzmann Method on NonUniform Grids}, title = {Massively Parallel Algorithms for the Lattice {Boltzmann} Method on NonUniform Grids},
journal = {SIAM Journal on Scientific Computing}, journal = {SIAM Journal on Scientific Computing},
year = {2016}, year = {2016},
volume = {38}, volume = {38},
...@@ -30,18 +37,19 @@ ...@@ -30,18 +37,19 @@
@Article{rettinger2016simulations, @Article{rettinger2016simulations,
author = {Rettinger, Christoph and R{\"u}de, Ulrich}, author = {Rettinger, Christoph and R{\"u}de, Ulrich},
title = {Simulations of Particle-laden Flows with the Lattice Boltzmann Method}, title = {Simulations of Particle-laden Flows with the Lattice {Boltzmann} Method},
journal = {PAMM}, journal = {Proceedings in Applied Mathematics and Mechanics},
year = {2016}, year = {2016},
volume = {16}, volume = {16},
number = {1}, number = {1},
pages = {607--608}, pages = {607--608},
doi = {10.1002/pamm.201610292},
publisher = {Wiley Online Library}, publisher = {Wiley Online Library},
} }
@Article{rettinger2017comparative, @Article{rettinger2017comparative,
author = {Rettinger, Christoph and R{\"u}de, Ulrich}, author = {Rettinger, Christoph and R{\"u}de, Ulrich},
title = {A comparative study of fluid-particle coupling methods for fully resolved lattice Boltzmann simulations}, title = {A comparative study of fluid-particle coupling methods for fully resolved lattice {Boltzmann} simulations},
journal = {Computers \& Fluids}, journal = {Computers \& Fluids},
volume = {154}, volume = {154},
pages = {74--89}, pages = {74--89},
...@@ -61,10 +69,10 @@ ...@@ -61,10 +69,10 @@
} }
@Article{rettinger2018dps, @Article{rettinger2018dps,
title = {A coupled lattice Boltzmann method and discrete element method for discrete particle simulations of particulate flows}, title = {A coupled lattice {Boltzmann} method and discrete element method for discrete particle simulations of particulate flows},
journal = {Computers \& Fluids}, journal = {Computers \& Fluids},
volume = {172}, volume = {172},
pages = {706 - 719}, pages = {706--719},
year = {2018}, year = {2018},
doi = {10.1016/j.compfluid.2018.01.023}, doi = {10.1016/j.compfluid.2018.01.023},
author = {Rettinger, Christoph and R{\"u}de, Ulrich} author = {Rettinger, Christoph and R{\"u}de, Ulrich}
...@@ -75,119 +83,129 @@ ...@@ -75,119 +83,129 @@
title = {Dynamic Load Balancing Techniques for Particulate Flow Simulations}, title = {Dynamic Load Balancing Techniques for Particulate Flow Simulations},
journal = {Computation}, journal = {Computation},
volume = {7}, volume = {7},
number = {1},
year = {2019}, year = {2019},
doi = {10.3390/computation7010009} doi = {10.3390/computation7010009}
} }
@Article{ginzburg2008two, @Article{ginzburg2008two,
author = {Ginzburg, Irina and Verhaeghe, Frederik and d'Humi{\`e}res, Dominique}, author = {Ginzburg, Irina and Verhaeghe, Frederik and d'Humi{\`e}res, Dominique},
title = {Two-relaxation-time lattice Boltzmann scheme: About parametrization, velocity, pressure and mixed boundary conditions}, title = {Two-relaxation-time lattice {Boltzmann} scheme: About parametrization, velocity, pressure and mixed boundary conditions},
journal = {Communications in computational physics}, journal = {Communications in Computational Physics},
year = {2008}, year = {2008},
volume = {3}, volume = {3},
number = {2}, number = {2},
pages = {427--478}, pages = {427--478},
url = {https://www.global-sci.com/intro/article_detail/cicp/7862.html},
} }
@Article{bhatnagar1954model, @Article{bhatnagar1954model,
author = {Bhatnagar, Prabhu Lal and Gross, Eugene P and Krook, Max}, author = {Bhatnagar, Prabhu Lal and Gross, Eugene P and Krook, Max},
title = {A model for collision processes in gases. I. Small amplitude processes in charged and neutral one-component systems}, title = {A model for collision processes in gases. {I.} {Small} amplitude processes in charged and neutral one-component systems},
journal = {Physical review}, journal = {Physical Review},
year = {1954}, year = {1954},
volume = {94}, volume = {94},
number = {3}, number = {3},
pages = {511}, pages = {511--525},
publisher = {APS}, publisher = {APS},
doi = {10.1103/PhysRev.94.511},
} }
@Article{dhumieres2002multiple, @Article{dhumieres2002multiple,
author = {d'Humi{\`e}res, Dominique}, author = {d'Humi{\`e}res, Dominique},
title = {Multiple--relaxation--time lattice Boltzmann models in three dimensions}, title = {Multiple--relaxation--time lattice {Boltzmann} models in three dimensions},
journal = {Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences}, journal = {Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences},
year = {2002}, year = {2002},
volume = {360}, volume = {360},
number = {1792}, number = {1792},
pages = {437--451}, pages = {437--451},
publisher = {The Royal Society}, publisher = {The Royal Society},
doi = {10.1098/rsta.2001.0955},
} }
@Article{pan2006evaluation, @Article{pan2006evaluation,
author = {Pan, Chongxun and Luo, Li-Shi and Miller, Cass T}, author = {Pan, Chongxun and Luo, Li-Shi and Miller, Cass T},
title = {An evaluation of lattice Boltzmann schemes for porous medium flow simulation}, title = {An evaluation of lattice {Boltzmann} schemes for porous medium flow simulation},
journal = {Computers \& fluids}, journal = {Computers \& fluids},
year = {2006}, year = {2006},
volume = {35}, volume = {35},
number = {8}, number = {8},
pages = {898--909}, pages = {898--909},
publisher = {Elsevier}, publisher = {Elsevier},
doi = {10.1016/j.compfluid.2005.03.008},
} }
@Article{geier2015cumulant, @Article{geier2015cumulant,
author = {Geier, Martin and Sch{\"o}nherr, Martin and Pasquali, Andrea and Krafczyk, Manfred}, author = {Geier, Martin and Sch{\"o}nherr, Martin and Pasquali, Andrea and Krafczyk, Manfred},
title = {The cumulant lattice Boltzmann equation in three dimensions: Theory and validation}, title = {The cumulant lattice {Boltzmann} equation in three dimensions: {Theory} and validation},
journal = {Computers \& Mathematics with Applications}, journal = {Computers \& Mathematics with Applications},
year = {2015}, year = {2015},
volume = {70}, volume = {70},
number = {4}, number = {4},
pages = {507--547}, pages = {507--547},
publisher = {Elsevier}, publisher = {Elsevier},
doi = {10.1016/j.camwa.2015.05.001},
} }
@Article{guo2002discrete, @Article{guo2002discrete,
author = {Guo, Zhaoli and Zheng, Chuguang and Shi, Baochang}, author = {Guo, Zhaoli and Zheng, Chuguang and Shi, Baochang},
title = {Discrete lattice effects on the forcing term in the lattice Boltzmann method}, title = {Discrete lattice effects on the forcing term in the lattice {Boltzmann} method},
journal = {Physical Review E}, journal = {Physical Review E},
year = {2002}, year = {2002},
volume = {65}, volume = {65},
number = {4}, number = {4},
pages = {046308}, pages = {046308},
publisher = {APS}, publisher = {APS},
doi = {10.1103/PhysRevE.65.046308},
} }
@Article{luo1993lattice, @PhdThesis{luo1993lattice,
author = {Luo, Li-Shi}, author = {Luo, Li-Shi},
title = {Lattice-gas automata and lattice Boltzmann equations for two-dimensional hydrodynamics}, title = {Lattice-gas automata and lattice {Boltzmann} equations for two-dimensional hydrodynamics},
school = {Georgia Institute of Technology},
year = {1993}, year = {1993},
url = {https://www.proquest.com/openview/324e5020a496c85ca81178b0c97f35d7/},
} }
@Article{shan1994simulation, @Article{shan1994simulation,
author = {Shan, Xiaowen and Chen, Hudong}, author = {Shan, Xiaowen and Chen, Hudong},
title = {Simulation of nonideal gases and liquid-gas phase transitions by the lattice Boltzmann equation}, title = {Simulation of nonideal gases and liquid-gas phase transitions by the lattice {Boltzmann} equation},
journal = {Physical Review E}, journal = {Physical Review E},
year = {1994}, year = {1994},
volume = {49}, volume = {49},
number = {4}, number = {4},
pages = {2941}, pages = {2941--2948},
publisher = {APS}, publisher = {APS},
doi = {10.1103/PhysRevE.49.2941},
} }
@PhdThesis{schiller2008thermal, @PhdThesis{schiller2008thermal,
author = {Schiller, Ulf D}, author = {Schiller, Ulf D},
title = {Thermal fluctuations and boundary conditions in the lattice Boltzmann method}, title = {Thermal fluctuations and boundary conditions in the lattice {Boltzmann} method},
school = {Johannes Gutenberg-Universit{\"a}t, Mainz}, school = {Johannes Gutenberg-Universit{\"a}t, Mainz},
year = {2008}, year = {2008},
doi = {10.25358/openscience-3231},
} }
@PhdThesis{latt2007hydrodynamic, @PhdThesis{latt2007hydrodynamic,
author = {Latt, Jonas}, author = {Latt, Jonas},
title = {Hydrodynamic limit of lattice Boltzmann equations}, title = {Hydrodynamic limit of lattice {Boltzmann} equations},
school = {University of Geneva}, school = {University of Geneva},
year = {2007}, year = {2007},
doi = {10.13097/archive-ouverte/unige:464},
} }
@InProceedings{kupershtokh2003calculations, @InProceedings{kupershtokh2003calculations,
author = {Kupershtokh, AL}, author = {Kupershtokh, AL},
title = {Calculations of the action of electric forces in the lattice Boltzmann equation method using the difference of equilibrium distribution functions}, title = {Calculations of the action of electric forces in the lattice {Boltzmann} equation method using the difference of equilibrium distribution functions},
booktitle = {Proc. 7th Int. Conf. on Modern Problems of Electrophysics and Electrohydrodynamics of Liquids, St. Petersburg State University, St. Petersburg, Russia}, booktitle = {Proc. 7th Int. Conf. on Modern Problems of Electrophysics and Electrohydrodynamics of Liquids, St. Petersburg State University, St. Petersburg, Russia},
year = {2003}, year = {2003},
volume = {152}, pages = {152--155},
pages = {155},
organization = {152 155},
} }
@Article{kupershtokh2004incorporating, @Article{kupershtokh2004incorporating,
author = {Kupershtokh, AL}, author = {Kupershtokh, AL},
title = {Incorporating a body force term into the lattice Boltzmann equation}, title = {Incorporating a body force term into the lattice {Boltzmann} equation},
journal = {Bulletin of Novosibirsk State University: Series of Mathematics, Mechanics and Informatics}, journal = {Bulletin of Novosibirsk State University: Series of Mathematics, Mechanics and Informatics},
year = {2004}, year = {2004},
volume = {4}, volume = {4},
...@@ -197,13 +215,13 @@ ...@@ -197,13 +215,13 @@
@Article{ginzburg2008study, @Article{ginzburg2008study,
author = {Ginzburg, Irina and Verhaeghe, Frederik and d'Humi{\`e}res, Dominique}, author = {Ginzburg, Irina and Verhaeghe, Frederik and d'Humi{\`e}res, Dominique},
title = {Study of simple hydrodynamic solutions with the two-relaxation-times lattice Boltzmann scheme}, title = {Study of simple hydrodynamic solutions with the two-relaxation-times lattice {Boltzmann} scheme},
journal = {Communications in computational physics}, journal = {Communications in computational physics},
year = {2008}, year = {2008},
volume = {3}, volume = {3},
number = {3}, number = {3},
pages = {519--581}, pages = {519--581},
owner = {mkuron}, url = {https://www.global-sci.com/intro/article_detail/cicp/7865.html},
} }
@Article{Baerentzen2005, @Article{Baerentzen2005,
...@@ -215,14 +233,14 @@ ...@@ -215,14 +233,14 @@
number = {3}, number = {3},
pages = {243-253}, pages = {243-253},
month = {May}, month = {May},
url = {https://dx.doi.org/10.1109/TVCG.2005.49},
doi = {10.1109/TVCG.2005.49}, doi = {10.1109/TVCG.2005.49},
issn = {1077-2626}, issn = {1077-2626},
keywords = {computational geometry;mesh generation;angle weighted pseudonormal;polyhedron;signed distance computation;smooth surfaces;triangle mesh;Geometry;Robustness;Index Terms- Mesh;normal;polyhedron.;pseudonormal;signed distance field;Algorithms;Computer Graphics;Computer Simulation;Image Enhancement;Image Interpretation, Computer-Assisted;Imaging, Three-Dimensional;Information Storage and Retrieval;Numerical Analysis, Computer-Assisted;Pattern Recognition, Automated;Signal Processing, Computer-Assisted},
} }
@Article{Jones1995, @Article{Jones1995,
author = {Jones, Mark W}, author = {Jones, Mark W},
title = {3D distance from a point to a triangle}, title = {{3D} distance from a point to a triangle},
journal = {Department of Computer Science, University of Wales Swansea Technical Report CSR-5}, journal = {Department of Computer Science, University of Wales Swansea Technical Report CSR-5},
year = {1995}, year = {1995},
} }
...@@ -248,7 +266,7 @@ ...@@ -248,7 +266,7 @@
} }
@Article{noble1998psm, @Article{noble1998psm,
title = {A {Lattice}-{Boltzmann} {Method} for {Partially} {Saturated} {Computational} {Cells}}, title = {A Lattice-{Boltzmann} Method for Partially Saturated Computational Cells},
volume = {09}, volume = {09},
issn = {0129-1831}, issn = {0129-1831},
doi = {10.1142/S0129183198001084}, doi = {10.1142/S0129183198001084},
...@@ -273,7 +291,7 @@ ...@@ -273,7 +291,7 @@
@Article{nguyen2002lubrication, @Article{nguyen2002lubrication,
title = {Lubrication corrections for lattice-Boltzmann simulations of particle suspensions}, title = {Lubrication corrections for lattice-Boltzmann simulations of particle suspensions},
author = {Nguyen, N.-Q. and Ladd, A. J. C.}, author = {Nguyen, N.-Q. and Ladd, A. J. C.},
journal = {Phys. Rev. E}, journal = {Physical Review E},
volume = {66}, volume = {66},
issue = {4}, issue = {4},
pages = {046708}, pages = {046708},
...@@ -287,7 +305,7 @@ ...@@ -287,7 +305,7 @@
title = {A Local Parallel Communication Algorithm for Polydisperse Rigid Body Dynamics}, title = {A Local Parallel Communication Algorithm for Polydisperse Rigid Body Dynamics},
journal = {Parallel Computing}, journal = {Parallel Computing},
volume = {80}, volume = {80},
pages = {36 - 48}, pages = {36--48},
year = {2018}, year = {2018},
issn = {0167-8191}, issn = {0167-8191},
doi = {10.1016/j.parco.2018.10.002}, doi = {10.1016/j.parco.2018.10.002},
...@@ -298,7 +316,7 @@ ...@@ -298,7 +316,7 @@
title = {A temporal discretization scheme to compute the motion of light particles in viscous flows by an immersed boundary method}, title = {A temporal discretization scheme to compute the motion of light particles in viscous flows by an immersed boundary method},
journal = {Journal of Computational Physics}, journal = {Journal of Computational Physics},
volume = {281}, volume = {281},
pages = {591 - 613}, pages = {591--613},
year = {2015}, year = {2015},
issn = {0021-9991}, issn = {0021-9991},
doi = {10.1016/j.jcp.2014.10.039}, doi = {10.1016/j.jcp.2014.10.039},
...@@ -307,27 +325,32 @@ ...@@ -307,27 +325,32 @@
@inproceedings{bauer2019code, @inproceedings{bauer2019code,
title = {Code generation for massively parallel phase-field simulations}, title = {Code generation for massively parallel phase-field simulations},
author = {Bauer, Martin and H{\"o}tzer, Johannes and Ernst, Dominik and Hammer, Julian and Seiz, Marco and Hierl, Henrik and H{\"o}nig, Jan and K{\"o}stler, Harald and Wellein, Gerhard and Nestler, Britta and others}, author = {Bauer, Martin and H{\"o}tzer, Johannes and Ernst, Dominik and Hammer, Julian and Seiz, Marco and Hierl, Henrik and H{\"o}nig, Jan and K{\"o}stler, Harald and Wellein, Gerhard and Nestler, Britta and R{\"u}de, Ulrich},
booktitle = {Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis}, booktitle = {Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis},
pages = {1--32}, pages = {1--32},
year = {2019}, year = {2019},
doi = {10.1145/3295500.3356186} doi = {10.1145/3295500.3356186}
} }
@article{bauer2020walberla, @article{bauer2021walberla,
title = {waLBerla: A block-structured high-performance framework for multiphysics simulations}, title = {{waLBerla}: A block-structured high-performance framework for multiphysics simulations},
author = {Bauer, Martin and Eibl, Sebastian and Godenschwager, Christian and Kohl, Nils and Kuron, Michael and Rettinger, Christoph and Schornbaum, Florian and Schwarzmeier, Christoph and Th{\"o}nnes, Dominik and K{\"o}stler, Harald and others}, author = {Bauer, Martin and Eibl, Sebastian and Godenschwager, Christian and Kohl, Nils and Kuron, Michael and Rettinger, Christoph and Schornbaum, Florian and Schwarzmeier, Christoph and Th{\"o}nnes, Dominik and K{\"o}stler, Harald and R{\"u}de, Ulrich},
journal = {Computers \& Mathematics with Applications}, journal = {Computers \& Mathematics with Applications},
year = {2020}, year = {2021},
publisher = {Elsevier}, publisher = {Elsevier},
volume = {81},
pages = {478-501},
doi = {10.1016/j.camwa.2020.01.007} doi = {10.1016/j.camwa.2020.01.007}
} }
@article{bauer2020lbmpy, @article{bauer2021lbmpy,
title = {lbmpy: A flexible code generation toolkit for highly efficient lattice Boltzmann simulations}, title = {{lbmpy}: Automatic code generation for efficient parallel lattice {Boltzmann} methods},
author = {Bauer, Martin and K{\"o}stler, Harald and R{\"u}de, Ulrich}, author = {Bauer, Martin and K{\"o}stler, Harald and R{\"u}de, Ulrich},
journal = {arXiv preprint arXiv:2001.11806}, journal = {Journal of Computational Science},
year = {2020} volume = {49},
pages = {101269},
year = {2021},
doi = {10.1016/j.jocs.2020.101269},
} }
@Comment{jabref-meta: databaseType:bibtex;} @Comment{jabref-meta: databaseType:bibtex;}
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