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.flake8
View file @ 5600b6b6
[flake8]
max-line-length=120
exclude=pystencils/jupyter.py,
pystencils/plot.py
pystencils/session.py
exclude=src/pystencils/jupyter.py,
src/pystencils/plot.py
src/pystencils/session.py
ignore = W293 W503 W291 C901 E741
.gitattributes
View file @ 5600b6b6
pystencils/_version.py export-subst
src/pystencils/_version.py export-subst
.gitignore
View file @ 5600b6b6
......@@ -5,7 +5,7 @@ __pycache__
*.vti
/build
/dist
/*.egg-info
*.egg-info
.cache
_build
/html_doc
......@@ -15,15 +15,16 @@ _build
_local_tmp
RELEASE-VERSION
test-report
pystencils/boundaries/createindexlistcython.c
pystencils/boundaries/createindexlistcython.*.so
pystencils_tests/tmp
pystencils_tests/var
pystencils_tests/kerncraft_inputs/.2d-5pt.c_kerncraft/
pystencils_tests/kerncraft_inputs/.3d-7pt.c_kerncraft/
src/pystencils/boundaries/createindexlistcython.c
src/pystencils/boundaries/createindexlistcython.*.so
tests/tmp
tests/var
tests/kerncraft_inputs/.2d-5pt.c_kerncraft/
tests/kerncraft_inputs/.3d-7pt.c_kerncraft/
report.xml
coverage_report/
# macOS
**/.DS_Store
*.uuid
.gitlab-ci.yml
View file @ 5600b6b6
stages:
- pretest
- test
- nightly
- docs
- deploy
# -------------------------- Templates ------------------------------------------------------------------------------------
# Base configuration for jobs meant to run at every commit
.every-commit:
rules:
- if: $CI_PIPELINE_SOURCE != "schedule"
# Configuration for jobs meant to run on each commit to pycodegen/pystencils/master
.every-commit-master:
rules:
- if: '$CI_PIPELINE_SOURCE != "schedule" && $CI_PROJECT_PATH == "pycodegen/pystencils" && $CI_COMMIT_BRANCH == "master"'
# Base configuration for jobs meant to run at a schedule
.scheduled:
rules:
- if: $CI_PIPELINE_SOURCE == "schedule"
# -------------------------- Tests ------------------------------------------------------------------------------------
# Normal test - runs on every commit all but "long run" tests
tests-and-coverage:
stage: pretest
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full:cupy12.3
before_script:
- pip install -e .
script:
- pip install sympy --upgrade
- env
- pip list
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- mkdir public
- py.test -v -n $NUM_CORES --cov-report html --cov-report term --cov=. -m "not longrun" --html test-report/index.html --junitxml=report.xml
- python3 -m coverage xml
- pytest -v -n $NUM_CORES --cov-report html --cov-report xml --cov-report term --cov=. -m "not longrun" --html test-report/index.html --junitxml=report.xml
- python -m coverage xml
tags:
- docker
- cuda11
- AVX
coverage: /Total coverage:\s\d+.\d+\%/
artifacts:
when: always
paths:
- coverage_report
- test-report
reports:
cobertura: coverage.xml
coverage_report:
coverage_format: cobertura
path: coverage.xml
junit: report.xml
# pipeline with latest python version
latest-python:
# Normal test with longruns
tests-and-coverage-with-longrun:
stage: test
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/latest_python
when: manual
allow_failure: true
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full:cupy12.3
before_script:
- pip install sympy --upgrade
- pip install -e .
script:
- env
- pip list
......@@ -50,74 +73,66 @@ latest-python:
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- mkdir public
- py.test -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
- py.test -v -n $NUM_CORES
tags:
- docker
- cuda11
- AVX
artifacts:
when: always
reports:
junit: report.xml
# Nightly test - runs "long run" jobs only
test-longrun:
# pipeline with latest python version
latest-python:
stage: test
only:
variables:
- $ENABLE_NIGHTLY_BUILDS
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/latest_python
before_script:
- pip install -e .
script:
- env
- pip list
- pip install -e .
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- py.test -v -n $NUM_CORES --cov-report html --cov-report term --cov=. --html test-report/index.html --junitxml=report.xml
- mkdir public
- py.test -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
tags:
- docker
- cuda11
- AVX
artifacts:
when: always
paths:
- coverage_report
- test-report
reports:
junit: report.xml
# Minimal tests in windows environment
minimal-windows:
stage: test
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
tags:
- win
script:
- export NUM_CORES=$(nproc --all)
- source /cygdrive/c/Users/build/Miniconda3/Scripts/activate
- source activate pystencils
- pip install joblib
- pip list
- python -c "import numpy"
- py.test -v -m "not (notebook or longrun)"
#minimal-windows:
# stage: test
# tags:
# - win
# script:
# - export NUM_CORES=$(nproc --all)
# - source /cygdrive/c/Users/build/Miniconda3/Scripts/activate
# - source activate pystencils
# - pip install joblib
# - pip list
# - python -c "import numpy"
# - py.test -v -m "not (notebook or longrun)"
ubuntu:
stage: test
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/ubuntu
before_script:
# - apt-get -y remove python3-sympy
- ln -s /usr/include/locale.h /usr/include/xlocale.h
# - pip3 install `grep -Eo 'sympy[>=]+[0-9\.]+' setup.py | sed 's/>/=/g'`
- pip3 install -e .
script:
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- sed -i 's/--doctest-modules //g' pytest.ini
- env
- pip3 list
- pytest-3 -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
- pip list
- pytest -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
tags:
- docker
- cuda11
......@@ -129,10 +144,11 @@ ubuntu:
.multiarch_template:
stage: test
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
extends: .every-commit
allow_failure: true
before_script: &multiarch_before_script
# - pip3 install -v .
- export PYTHONPATH=src
- python3 -c "import pystencils as ps; ps.cpu.cpujit.read_config()"
- sed -i '/^fail_under.*/d' pytest.ini
script:
......@@ -142,20 +158,26 @@ ubuntu:
- sed -i 's/--doctest-modules //g' pytest.ini
- env
- pip3 list
- pytest-3 -v -n $NUM_CORES --junitxml=report.xml pystencils_tests/test_*vec*.py pystencils_tests/test_random.py
- python3 -m pytest -v -n $NUM_CORES --cov-report html --cov-report xml --cov=. --junitxml=report.xml tests/test_*vec*.py tests/test_random.py tests/test_half_precision.py
- python3 -m coverage xml
tags:
- docker
- AVX
artifacts:
when: always
paths:
- coverage_report
reports:
coverage_report:
coverage_format: cobertura
path: coverage.xml
junit: report.xml
arm64v8:
extends: .multiarch_template
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/arm64
variables:
PYSTENCILS_SIMD: "neon"
QEMU_CPU: "cortex-a76"
before_script:
- *multiarch_before_script
- sed -i s/march=native/march=armv8-a/g ~/.config/pystencils/config.json
......@@ -163,51 +185,41 @@ arm64v8:
ppc64le:
extends: .multiarch_template
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/ppc64le
variables:
PYSTENCILS_SIMD: "vsx"
before_script:
- *multiarch_before_script
- sed -i s/mcpu=native/mcpu=power8/g ~/.config/pystencils/config.json
arm64v9:
# Compiler support for SVE is still pretty rough: GCC 10+11 produce incorrect code for fixed-width vectors,
# while Clang 12 produces memory-corrupting heisenbugs unless we enable the address sanitizer.
# In the RNG tests, GCC 10+11 produce an internal compiler error.
# The memory corruption seems to only happen with qemu-user, not with qemu-system.
# Once the compilers and QEMU have improved, this job should be cleaned up to match the others.
# SVE support is still unreliable in GCC 11 (incorrect code for fixed-width vectors, internal compiler errors).
# For half precision Clang is necessary
extends: .multiarch_template
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/arm64
variables:
PYSTENCILS_SIMD: "sve256,sve512,sve"
ASAN_OPTIONS: detect_leaks=0
LD_PRELOAD: /usr/lib/aarch64-linux-gnu/libasan.so.6
before_script:
- *multiarch_before_script
- sed -i s/march=native/march=armv8-a+sve/g ~/.config/pystencils/config.json
- sed -i s/march=native/march=armv9-a+sve2+sme/g ~/.config/pystencils/config.json
- sed -i s/g\+\+/clang++/g ~/.config/pystencils/config.json
riscv64:
# The RISC-V vector extension is still experimental and needs special compiler flags.
# Once they are officially released, this job should be cleaned up to match the others.
# RISC-V vector extension are currently not supported by GCC.
extends: .multiarch_template
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/riscv64
variables:
# explicitly set SIMD as detection requires QEMU >= 8.1
PYSTENCILS_SIMD: "rvv"
QEMU_CPU: "rv64,v=true"
QEMU_CPU: "rv64,v=true,zicboz=true"
before_script:
- *multiarch_before_script
- sed -i 's/march=native/march=rv64imfdv0p10 -menable-experimental-extensions/g' ~/.config/pystencils/config.json
- sed -i s/g\+\+/clang++/g ~/.config/pystencils/config.json
- sed -i 's/fopenmp/fopenmp=libgomp -I\/usr\/include\/riscv64-linux-gnu/g' ~/.config/pystencils/config.json
- sed -i 's/march=native/march=rv64imfdvzicboz/g' ~/.config/pystencils/config.json
- sed -i s/g\+\+/clang++-15/g ~/.config/pystencils/config.json
minimal-conda:
stage: pretest
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/minimal_conda
before_script:
- pip install -e .
script:
- python setup.py quicktest
- python quicktest.py
tags:
- docker
- cuda
......@@ -215,13 +227,13 @@ minimal-conda:
minimal-sympy-master:
stage: test
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/minimal_conda
before_script:
- pip install -e .
script:
- python -m pip install --upgrade git+https://github.com/sympy/sympy.git
- python setup.py quicktest
- python quicktest.py
allow_failure: true
tags:
- docker
......@@ -247,7 +259,6 @@ pycodegen-integration:
- cd ..
- pip install -e pystencils/
- pip install -e lbmpy/
- pip install -e pygrandchem/
- cmake --version
- ./install_walberla.sh
- export NUM_CORES=$(nproc --all)
......@@ -257,14 +268,12 @@ pycodegen-integration:
- py.test -v -n $NUM_CORES --junitxml=report.xml .
- cd ../lbmpy
- py.test -v -n $NUM_CORES --junitxml=report.xml .
- cd ../pygrandchem
- py.test -v -n $NUM_CORES --junitxml=report.xml .
- cd ../walberla/build/
- make -j $NUM_CORES CodegenJacobiCPU CodegenJacobiGPU CodegenPoissonCPU CodegenPoissonGPU MicroBenchmarkGpuLbm LbCodeGenerationExample
- make -j $NUM_CORES multiphaseCPU multiphaseGPU FluctuatingMRT FlowAroundSphereCodeGen
- make -j $NUM_CORES multiphaseCPU multiphaseGPU FluctuatingMRT FlowAroundSphereCodeGen FieldLayoutAndVectorizationTest GeneratedOutflowBC
- cd apps/benchmarks/UniformGridGPU
- make -j $NUM_CORES
- cd ../UniformGridGenerated
- cd ../UniformGridCPU
- make -j $NUM_CORES
tags:
- docker
......@@ -275,26 +284,57 @@ pycodegen-integration:
reports:
junit: pycodegen/*/report.xml
# -------------------- Scheduled Tasks --------------------------------------------------------------------------
# Nightly test against the latest (pre-release) version of SymPy published on PyPI
nightly-sympy:
stage: nightly
needs: []
extends: .scheduled
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/latest_python
before_script:
- pip install -e .
- pip install --upgrade --pre sympy
script:
- env
- pip list
- export NUM_CORES=$(nproc --all)
- mkdir -p ~/.config/matplotlib
- echo "backend:template" > ~/.config/matplotlib/matplotlibrc
- mkdir public
- pytest -v -n $NUM_CORES -m "not longrun" --junitxml=report.xml
tags:
- docker
- AVX
- cuda
artifacts:
when: always
reports:
junit: report.xml
# -------------------- Linter & Documentation --------------------------------------------------------------------------
flake8-lint:
stage: pretest
except:
variables:
- $ENABLE_NIGHTLY_BUILDS
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
script:
- flake8 pystencils
- flake8 src/pystencils
tags:
- docker
build-documentation:
stage: test
stage: docs
extends: .every-commit
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/documentation
needs: []
before_script:
- pip install -e .
script:
- export PYTHONPATH=`pwd`
- mkdir html_doc
- sphinx-build -b html doc html_doc
- sphinx-build -W -b html doc html_doc
......@@ -307,7 +347,9 @@ build-documentation:
pages:
image: i10git.cs.fau.de:5005/pycodegen/pycodegen/full
extends: .every-commit-master
stage: deploy
needs: ["tests-and-coverage", "build-documentation"]
script:
- ls -l
- mv coverage_report html_doc
......@@ -317,5 +359,3 @@ pages:
- public
tags:
- docker
only:
- master@pycodegen/pystencils
MANIFEST.in
View file @ 5600b6b6
include README.md
include COPYING.txt
include AUTHORS.txt
include CONTRIBUTING.md
CHANGELOG.md
global-include *.pyx
include versioneer.py
include pystencils/_version.py
include CHANGELOG.md
README.md
View file @ 5600b6b6
......@@ -52,7 +52,7 @@ pip install pystencils[interactive]
Without `[interactive]` you get a minimal version with very little dependencies.
All options:
- `gpu`: use this if an NVIDIA GPU is available and CUDA is installed
- `gpu`: use this if an NVIDIA or AMD GPU is available and CUDA or ROCm is installed
- `alltrafos`: pulls in additional dependencies for loop simplification e.g. libisl
- `bench_db`: functionality to store benchmark result in object databases
- `interactive`: installs dependencies to work in Jupyter including image I/O, plotting etc.
......@@ -63,7 +63,7 @@ Options can be combined e.g.
pip install pystencils[interactive, gpu, doc]
```
pystencils is also fully compatible with Windows machines. If working with visual studio and pycuda makes sure to run example files first to ensure that pycuda can find the compiler's executable.
pystencils is also fully compatible with Windows machines. If working with visual studio and cupy makes sure to run example files first to ensure that cupy can find the compiler's executable.
Documentation
-------------
......@@ -81,4 +81,7 @@ Many thanks go to the [contributors](https://i10git.cs.fau.de/pycodegen/pystenci
If you use pystencils in a publication, please cite the following articles:
Overview:
- M. Bauer et al, Code Generation for Massively Parallel Phase-Field Simulations. Association for Computing Machinery, 2019. https://doi.org/10.1145/3295500.3356186
\ No newline at end of file
- M. Bauer et al, Code Generation for Massively Parallel Phase-Field Simulations. Association for Computing Machinery, 2019. https://doi.org/10.1145/3295500.3356186
Performance Modelling:
- D. Ernst et al, Analytical performance estimation during code generation on modern GPUs. Journal of Parallel and Distributed Computing, 2023. https://doi.org/10.1016/j.jpdc.2022.11.003
binder/environment.yml
View file @ 5600b6b6
......@@ -7,7 +7,7 @@
# conda env create -f conda_environment_user.yml
# . activate pystencils
#
# If you have CUDA installed and want to use your GPU, uncomment the last line to install pycuda
# If you have CUDA or ROCm installed and want to use your GPU, uncomment the last line to install cupy
#
# ----------------------------------------------------------------------------------------------------------------------
......@@ -32,4 +32,4 @@ dependencies:
- ipy_table # HTML tables for jupyter notebooks
- pyevtk # VTK output for serial simulations
- blitzdb # file-based No-SQL database to store simulation results
#- pycuda # add this if you have CUDA installed
#- cupy # add this if you have CUDA or ROCm installed
conftest.py
View file @ 5600b6b6
......@@ -8,7 +8,7 @@ import nbformat
import pytest
from nbconvert import PythonExporter
from pystencils.boundaries.createindexlistcython import * # NOQA
from pystencils.boundaries.createindexlist import * # NOQA
# Trigger config file reading / creation once - to avoid race conditions when multiple instances are creating it
# at the same time
from pystencils.cpu import cpujit
......@@ -40,51 +40,48 @@ def add_path_to_ignore(path):
collect_ignore = [os.path.join(SCRIPT_FOLDER, "doc", "conf.py"),
os.path.join(SCRIPT_FOLDER, "pystencils", "opencl", "opencl.autoinit")]
add_path_to_ignore('pystencils_tests/benchmark')
os.path.join(SCRIPT_FOLDER, "src", "pystencils", "opencl", "opencl.autoinit")]
add_path_to_ignore('tests/benchmark')
add_path_to_ignore('_local_tmp')
try:
import pycuda
import cupy
except ImportError:
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_cudagpu.py")]
add_path_to_ignore('pystencils/gpucuda')
collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_gpu.py")]
add_path_to_ignore('src/pystencils/gpu')
try:
import waLBerla
except ImportError:
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_aligned_array.py"),
os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_datahandling_parallel.py"),
collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_aligned_array.py"),
os.path.join(SCRIPT_FOLDER, "tests/test_datahandling_parallel.py"),
os.path.join(SCRIPT_FOLDER, "doc/notebooks/03_tutorial_datahandling.ipynb"),
os.path.join(SCRIPT_FOLDER, "pystencils/datahandling/parallel_datahandling.py"),
os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_small_block_benchmark.ipynb")]
os.path.join(SCRIPT_FOLDER, "src/pystencils/datahandling/parallel_datahandling.py"),
os.path.join(SCRIPT_FOLDER, "tests/test_small_block_benchmark.ipynb")]
try:
import blitzdb
except ImportError:
add_path_to_ignore('pystencils/runhelper')
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_parameterstudy.py")]
add_path_to_ignore('src/pystencils/runhelper')
collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_parameterstudy.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, "tests/test_json_serializer.py")]
try:
import islpy
except ImportError:
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils/integer_set_analysis.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, "src/pystencils/integer_set_analysis.py")]
try:
import graphviz
except ImportError:
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils/backends/dot.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, "src/pystencils/backends/dot.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, "doc/notebooks/01_tutorial_getting_started.ipynb")]
try:
import pyevtk
except ImportError:
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils/datahandling/vtk.py")]
# TODO: Remove if Ubuntu 18.04 is no longer supported
if pytest_version < 50403:
collect_ignore += [os.path.join(SCRIPT_FOLDER, "pystencils_tests/test_jupyter_extensions.ipynb")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, "src/pystencils/datahandling/vtk.py")]
collect_ignore += [os.path.join(SCRIPT_FOLDER, 'setup.py')]
......
doc/conf.py 100644 → 100755
View file @ 5600b6b6
......@@ -26,14 +26,14 @@ templates_path = ['_templates']
source_suffix = '.rst'
master_doc = 'index'
copyright = f'{datetime.datetime.now().year}, Martin Bauer'
author = 'Martin Bauer'
copyright = f'{datetime.datetime.now().year}, Martin Bauer, Markus Holzer, Frederik Hennig'
author = 'Martin Bauer, Markus Holzer, Frederik Hennig'
# The short X.Y version (including .devXXXX, rcX, b1 suffixes if present)
version = re.sub(r'(\d+\.\d+)\.\d+(.*)', r'\1\2', pystencils.__version__)
version = re.sub(r'(\.dev\d+).*?$', r'\1', version)
# The full version, including alpha/beta/rc tags.
release = pystencils.__version__
language = None
language = 'en'
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', '**.ipynb_checkpoints']
default_role = 'any'
pygments_style = 'sphinx'
......
doc/notebooks/01_tutorial_getting_started.ipynb
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doc/notebooks/demo_wave_equation.ipynb
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doc/sphinx/kernel_compile_and_call.rst
View file @ 5600b6b6
......@@ -11,11 +11,11 @@ Creating kernels
.. autoclass:: pystencils.CreateKernelConfig
:members:
.. autofunction:: pystencils.create_domain_kernel
.. autofunction:: pystencils.kernelcreation.create_domain_kernel
.. autofunction:: pystencils.create_indexed_kernel
.. autofunction:: pystencils.kernelcreation.create_indexed_kernel
.. autofunction:: pystencils.create_staggered_kernel
.. autofunction:: pystencils.kernelcreation.create_staggered_kernel
Code printing
......@@ -27,11 +27,11 @@ Code printing
GPU Indexing
-------------
.. autoclass:: pystencils.gpucuda.AbstractIndexing
.. autoclass:: pystencils.gpu.AbstractIndexing
:members:
.. autoclass:: pystencils.gpucuda.BlockIndexing
.. autoclass:: pystencils.gpu.BlockIndexing
:members:
.. autoclass:: pystencils.gpucuda.LineIndexing
.. autoclass:: pystencils.gpu.LineIndexing
:members:
pyproject.toml 0 → 100644
View file @ 5600b6b6
[project]
name = "pystencils"
description = "Speeding up stencil computations on CPUs and GPUs"
dynamic = ["version"]
readme = "README.md"
authors = [
{ name = "Martin Bauer" },
{ name = "Jan Hönig " },
{ name = "Markus Holzer" },
{ name = "Frederik Hennig" },
{ email = "cs10-codegen@fau.de" },
]
license = { file = "COPYING.txt" }
requires-python = ">=3.10"
dependencies = ["sympy>=1.9,<=1.12.1", "numpy>=1.8.0", "appdirs", "joblib", "pyyaml", "fasteners"]
classifiers = [
"Development Status :: 4 - Beta",
"Framework :: Jupyter",
"Topic :: Software Development :: Code Generators",
"Topic :: Scientific/Engineering :: Physics",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
]
[project.urls]
"Bug Tracker" = "https://i10git.cs.fau.de/pycodegen/pystencils/-/issues"
"Documentation" = "https://pycodegen.pages.i10git.cs.fau.de/pystencils/"
"Source Code" = "https://i10git.cs.fau.de/pycodegen/pystencils"
[project.optional-dependencies]
gpu = ['cupy']
alltrafos = ['islpy', 'py-cpuinfo']
bench_db = ['blitzdb', 'pymongo', 'pandas']
interactive = [
'matplotlib',
'ipy_table',
'imageio',
'jupyter',
'pyevtk',
'rich',
'graphviz',
]
use_cython = [
'Cython'
]
doc = [
'sphinx',
'sphinx_rtd_theme',
'nbsphinx',
'sphinxcontrib-bibtex',
'sphinx_autodoc_typehints',
'pandoc',
]
tests = [
'pytest',
'pytest-cov',
'pytest-html',
'ansi2html',
'pytest-xdist',
'flake8',
'nbformat',
'nbconvert',
'ipython',
'matplotlib',
'py-cpuinfo',
'randomgen>=1.18',
]
[build-system]
requires = [
"setuptools>=61",
"versioneer[toml]>=0.29",
# 'Cython'
]
build-backend = "setuptools.build_meta"
[tool.setuptools.package-data]
pystencils = [
"include/*.h",
"boundaries/createindexlistcython.pyx"
]
[tool.setuptools.packages.find]
where = ["src"]
include = ["pystencils", "pystencils.*"]
namespaces = false
[tool.versioneer]
# See the docstring in versioneer.py for instructions. Note that you must
# re-run 'versioneer.py setup' after changing this section, and commit the
# resulting files.
VCS = "git"
style = "pep440"
versionfile_source = "src/pystencils/_version.py"
versionfile_build = "pystencils/_version.py"
tag_prefix = "release/"
parentdir_prefix = "pystencils-"
pystencils/backends/cuda_known_functions.txt deleted 100644 → 0
View file @ 59c13fb1
__prof_trigger
printf
__syncthreads
__syncthreads_count
__syncthreads_and
__syncthreads_or
__syncwarp
__threadfence
__threadfence_block
__threadfence_system
atomicAdd
atomicSub
atomicExch
atomicMin
atomicMax
atomicInc
atomicDec
atomicAnd
atomicOr
atomicXor
atomicCAS
__all_sync
__any_sync
__ballot_sync
__active_mask
__shfl_sync
__shfl_up_sync
__shfl_down_sync
__shfl_xor_sync
__match_any_sync
__match_all_sync
__isGlobal
__isShared
__isConstant
__isLocal
tex1Dfetch
tex1D
tex2D
tex3D
sqrtf
rsqrtf
cbrtf
rcbrtf
hypotf
rhypotf
norm3df
rnorm3df
norm4df
rnorm4df
normf
rnormf
expf
exp2f
exp10f
expm1f
logf
log2f
log10f
log1pf
sinf
cosf
tanf
sincosf
sinpif
cospif
sincospif
asinf
acosf
atanf
atan2f
sinhf
coshf
tanhf
asinhf
acoshf
atanhf
powf
erff
erfcf
erfinvf
erfcinvf
erfcxf
normcdff
normcdfinvf
lgammaf
tgammaf
fmaf
frexpf
ldexpf
scalbnf
scalblnf
logbf
ilogbf
j0f
j1f
jnf
y0f
y1f
ynf
cyl_bessel_i0f
cyl_bessel_i1f
fmodf
remainderf
remquof
modff
fdimf
truncf
roundf
rintf
nearbyintf
ceilf
floorf
lrintf
lroundf
llrintf
llroundf
sqrt
rsqrt
cbrt
rcbrt
hypot
rhypot
norm3d
rnorm3d
norm4d
rnorm4d
norm
rnorm
exp
exp2
exp10
expm1
log
log2
log10
log1p
sin
cos
tan
sincos
sinpi
cospi
sincospi
asin
acos
atan
atan2
sinh
cosh
tanh
asinh
acosh
atanh
pow
erf
erfc
erfinv
erfcinv
erfcx
normcdf
normcdfinv
lgamma
tgamma
fma
frexp
ldexp
scalbn
scalbln
logb
ilogb
j0
j1
jn
y0
y1
yn
cyl_bessel_i0
cyl_bessel_i1
fmod
remainder
remquo
mod
fdim
trunc
round
rint
nearbyint
ceil
floor
lrint
lround
llrint
llround
__fdividef
__sinf
__cosf
__tanf
__sincosf
__logf
__log2f
__log10f
__expf
__exp10f
__powf
__fadd_rn
__fsub_rn
__fmul_rn
__fmaf_rn
__frcp_rn
__fsqrt_rn
__frsqrt_rn
__fdiv_rn
__fadd_rz
__fsub_rz
__fmul_rz
__fmaf_rz
__frcp_rz
__fsqrt_rz
__frsqrt_rz
__fdiv_rz
__fadd_ru
__fsub_ru
__fmul_ru
__fmaf_ru
__frcp_ru
__fsqrt_ru
__frsqrt_ru
__fdiv_ru
__fadd_rd
__fsub_rd
__fmul_rd
__fmaf_rd
__frcp_rd
__fsqrt_rd
__frsqrt_rd
__fdiv_rd
__fdividef
__expf
__exp10f
__logf
__log2f
__log10f
__sinf
__cosf
__sincosf
__tanf
__powf
__dadd_rn
__dsub_rn
__dmul_rn
__fma_rn
__ddiv_rn
__drcp_rn
__dsqrt_rn
__dadd_rz
__dsub_rz
__dmul_rz
__fma_rz
__ddiv_rz
__drcp_rz
__dsqrt_rz
__dadd_ru
__dsub_ru
__dmul_ru
__fma_ru
__ddiv_ru
__drcp_ru
__dsqrt_ru
__dadd_rd
__dsub_rd
__dmul_rd
__fma_rd
__ddiv_rd
__drcp_rd
__dsqrt_rd
pystencils/data_types.py deleted 100644 → 0
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